Publications HS-SEQ

• Damen, L.A.A., Bui, T.P., van Wessel, T., Li, Y., Straten, B.F., Pampiermole, R., Daamen, W.F., Fernig, D.G., van Kuppevelt, T.H. Identification of heparin-binding amino acid residues in antibody HS4C3 with the potential to design antibodies against heparan sulfate domains. Glycobiology 2024 34(8): cwae046. DOI: 10.1093/glycob/cwae046   (https://doi.org/10.1093/glycob/cwae046). Publication date: Jun 2024
• Szekeres, G.P., Dyer, D.P., Miller, R.L., Pagel, K. Chemokine oligomers and the impact of fondaparinux binding. J. Am. Soc. Mass Spectrom. 2024 35(7): 1550-1555. DOI: 10.1021/jasms.4c00142   (https://doi.org/10.1021/jasms.4c00142). Publication date: Jul 2024
• Polewski, L., Moon, E., Zappe, A., Gotze, M., Szekeres, G.P., Roth, C., Pagel, K. Ion mobility mass spectrometry-based disaccharide analysis of glycosaminoglycans. Chem. Eur. J. 2024 30(35): e202400783. DOI: 10.1002/chem.202400783   (https://doi.org/10.1002/chem.202400783). Publication date: Jun 2024
• Bechtella, L., Chunsheng, J., Fentker, K., Erturk, G.R., Safferthal, M., Polewski, L., Gotze, M., Graeber, S.Y., Vos, G.M., Struwe, W.B., Mall, M.A., Mertins, P., Karlsson, N.G., Pagel, K. Ion mobility-tandem mass spectrometry of mucin-type O-glycans. Nat. Commun. 2024 15(1): 2611. DOI: 10.1038/s41467-024-46825-4   (https://doi.org/10.1038/s41467-024-46825-4). Publication date: Mar 2024
• Szekeres G.P., Hanozin E., Diehn R., Horlebein J., Polewski L., Zappe A., Lauster D., Pagel K. Heparin increases the antibiotic efficacy of colistin. Front. Anal. Sci. 2023 3. DOI: 10.3389/frans.2023.1154391. Publication date: May 2023.
• Sun L., Chopra P., Tomris I., van der Woude R., Liu L., de Vries R.P., Boons G.J. Well-defined heparin mimetics can inhibit binding of the trimeric spike of SARS—COV2 in a length-dependent manner. JACS Au 2023 3(4): 1185-1195. DOI: 10.1021/jacsau.3c00042. Publication date: Apr 2023.
• Riedel J., Lettow M., Grabarics M., Gotze M., Miller R.L., Boons G.J., Meijer G., von Helden G., Szekeres G.P., Pagel K. Predicting structural motifs of glycosaminoglycans using cryogenic infrared spectroscopy and random forest. J. Am. Chem. Soc. 2023 145(14): 7859-7868. DOI: 10.1021/jacs.2c12762. Publication date: Apr 2023.
• Gray A.L., Karlsson R., Roberts A.R.E., Ridley A.J.L., Pun N., Khan B., Lawless C., Luis R., Szpakowska M., Chevigne A., Hughes C.E., Medina-Ruiz L., Birchenough H.L., Mulholland I.Z., Salanga C.L., Yates E.A., Turnbull J.E., Handel T.M., Graham G.J., Jowitt T.A., Schiessl I., Richter R.P., Miller R.L., Dyer D.P. Chemokine CXCL4 interactions with extracellular matrix proteoglycans mediate widespread immune cell recruitment independent of chemokine receptors. Cell Rep. 2023 42(1): 111930. DOI: 10.1016/j.celrep.2022.111930. Publication date: Jan 2023.
• Pantazis C.B., Yang A., Lara E., McDonough J.A., Blauwendraat C., Peng L., Oguro H., Kanaujiya J., Zou J., Sebesta D., Pratt G., Cross E., Blockwick J., Buxton P., Kinner-Bibeau L., Medura C., Tompkins C., Hughes S., Santiana M., Faghri F., Nalls M.A., Vitale D., Ballard S., Qi Y.A., Ramos D.M., Anderson K.M., Stadler J., Narayan P., Papademetriou J., Reilly L., Nelson M.P., Aggarwal S., Rosen L.U., Kirwan P., Pisupati V., Coon S.L., Scholz S.W., Priebe T., Ottl M., Dong J., Meijer M., Janssen L.J.M., Lourenco V.S., van der Kant R., Crusius D., Paquet D., Raulin A.C., Bu G., Held A., Wainger B.J., Gabriele R.M.C., Casey J.M., Wray S., Abu-Bonsrah D., Parish C.L., Beccari M.S., Cleveland D.W., Li E., Rose I.V.L., Kampmann M., Calatayud Aristoy C., Verstreken P., Heinrich L., Chen M.Y., Schule B., Dou D., Holzbaur E.L.F., Zanellati M.C., Basundra R., Deshmukh M., Cohen S., Khanna R., Raman M., Nevin Z.S., Matia M., Van Lent J., Timmerman V., Conklin B.R., Johnson Chase K., Zhang K., Funes S., Bosco D.A., Erlebach L., Welzer M., Kronenberg-Versteeg D., Lyu G., Arenas E., Coccia E., Sarrafha L., Ahfeldt T., Marioni J.C., Skarnes W.C., Cookson M.R., Ward M.E., Merkle F.T. A reference human induced pluripotent stem cell line for large-scale collaborative studies. Cell Stem Cell 2022 29(12): 1685-1702 e22. DOI: 10.1016/j.stem.2022.11.004. Publication date: Dec 2022.
• Sun L., Chopra P., Boons G.J. Chemoenzymatic synthesis of heparan sulfate oligosaccharides having a domain structure. Angew. Chem. Int. Ed. 2022 61(47): e202211112. DOI: 10.1002/anie.202211112. Publication date: Nov 2022.
• Zappe A., Miller R.L., Struwe W.B., Pagel K. State-of-the-art glycosaminoglycan characterization. Mass Spectrom. Rev. 2022 41(6): 1040-1071. DOI: 10.1002/mas.21737. Publication date: Nov 2022.
• Grabarics M., Lettow M., Kirschbaum C., Greis K., Manz C., Pagel K. Mass spectrometry-based techniques to elucidate the sugar code. Chem. Rev. 2022 122(8): 7840-7908. DOI: 10.1021/acs.chemrev.1c00380. Publication date: Apr 2022.
• Szekeres G.P., Pagel K., Heiner Z. Analytical challenges of glycosaminoglycans at biological interfaces. Anal. Bioanal. Chem. 2022 414(1): 85-93. DOI: 10.1007/s00216-021-03705-w. Publication date: Jan 2022.
• Yan, H., Lockhauserbaumer, J., Szekeres, G.P., Mallagaray, A., Creutznacher, R., Taube, S., Peters, T., Pagel, K., Uetrecht, C. Protein secondary structure affects glycan clustering in native mass spectrometry. Life 11, 554 (2021). DOI: 10.3390/life11060554. Publication date: Jun 2021.
• Szekeres, G.P., Krekic, S., Miller, R.L., Mero, M., Pagel, K., Heiner, Z. The interaction of chondroitin sulfate with a lipid monolayer observed by using nonlinear vibrational spectroscopy. Phys. Chem. Chem. Phys. 23, 13389-13395 (2021). DOI: 10.1039/d1cp01975a. Publication date: Jun 2021.
• Lettow, M., Greis, K., Grabarics, M., Horlebein, J., Miller, R.L., Meijer, G., von Helden, G., Pagel, K. Chondroitin sulfate disaccharides in the gas phase: Differentiation and conformational constraints. J. Phys. Chem. A 125, 4373-4379 (2021). DOI: 10.1021/acs.jpca.1c02463. Publication date: May 2021.